PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00161.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family C3H
Protein Properties Length: 239aa    MW: 25473.1 Da    PI: 10.7342
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00161.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.61e-13202227126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +kt++C+ +  tG+C++G++C+FaHg
  Jcr4S00161.10 202 WKTRICNKWELTGYCPFGNKCHFAHG 227
                    8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-15197228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-9198227IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-9201228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347201229IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11202227IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MWDLGGYPNK PPLQPRTTQI VTSPPGIICP PSCTAATTLR DTPPDLLLSG RLSTQGTTCR  60
SSSGLGPVVT TISQQTSPPT KDHTNRDLPS RDNLPTILYR RYNFAGHAAR TPLVGKTFDT  120
RHHLQIFFSV LVLLLQRHTE IFLALRSHAR SKPWALIPLV GTARTIQPRI RGGGGGGGGS  180
AAAGGAGGGN GAGAGNIKPS NWKTRICNKW ELTGYCPFGN KCHFAHGSAG MSYQLLIVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347398e-74KM034739.1 Jatropha curcas clone JcMYB120 MYB family protein gene, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-16C3H family protein